NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224556_1000668

Scaffold Ga0224556_1000668


Overview

Basic Information
Taxon OID3300024295 Open in IMG/M
Scaffold IDGa0224556_1000668 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9404
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082044Metagenome / Metatranscriptome113Y
F102028Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0224556_100066810F102028N/AQLGSMAKAKTPGAPITPWGKWPKIKPETVAPLRDGMPDMYNHQPTRFVSKDEAKVRGWKHFWTGEICVTGHRAARYVANGSICVDCQRIERGQVPVYGKGVPELEEARRRKYTQKGTAPAGPPVPSAGEKNFLAKYAELKDFALAADACGRSESEFLAILSWNETFRDAVNRLEESIGVTRTQSVTAEFDWTDEKRRAFLITYANTADMKQSLRSVGATNVQFHKELNSNGKFQKDFDDAGQVARSVFDHAASAAATKGDARMLGRIAANFFPEKFGENLKVDLNVKQNLSLDQAHAQLTTLLSRFDRQGILAAPDAADEAAIEAEFEVVEPAGVDETDPDPEPTSADPGSDPNSDLVSG
Ga0224556_10006686F082044GAGMSVTLKLVHEEGLRLRQQSAHKVEGKDLTGAPTTTVDWRFVKRPDSSGKVVEECQQDEDPRRVDSNGRKVQLGTYTLHITAGMNNLVIERKGKVAPYSFKNGAIRNQVRVQHQRLIDSGRKTKDQKPVHEWKNDGQAQYVPPNSFSGVYVGDGQRAILDEMPT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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