NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228658_1079455

Scaffold Ga0228658_1079455


Overview

Basic Information
Taxon OID3300024297 Open in IMG/M
Scaffold IDGa0228658_1079455 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 71D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)820
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F007531Metagenome / Metatranscriptome349Y
F034715Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0228658_10794551F034715N/AGPMMDSDTNCSRCGAKHSSHHEEEMTGWEDEDIESEVEEVW
Ga0228658_10794552F000302GGAGGMVAVMSQDTKDRIAEMERQKIDLENQLEMLGYSGNLVRMHQIEEEIYEIEDTIRKLLP
Ga0228658_10794553F007531AGGAGMDTVNTKKILDFAKDTGLTDRREMVHGTLYAKLHEEKECDHFHKVIRTFYVDQINPEGGVNMYAVGDEFAFDFVPQDREAPVFSDEDYSGKEDMMPSDVDKGIWSEFAEEELLNNIPADVDTALDLEADAKEGR
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