NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228658_1080704

Scaffold Ga0228658_1080704


Overview

Basic Information
Taxon OID3300024297 Open in IMG/M
Scaffold IDGa0228658_1080704 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 71D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)813
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium TMED42(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018725Metagenome / Metatranscriptome233N

Sequences

Protein IDFamilyRBSSequence
Ga0228658_10807042F018725N/AMKTIVKVIATIAVLGGGFFAYQSVNAADITGNAGVSYSDTRTFRGVKQADDTLGVNVGLGTSLAEKVSVGLSLDSFNALEAGQTNELRTGVSLGYDVSETIGLSVGYTNYDYQSATSNNEIGLGVSVETLLNPSILYAMDSDNDSDVAEISVSHTISLNEQFGLTLDGTLGNVDVAADYNYHSLGATITSSLGGADTLAGVALV
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