NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247681_1024815

Scaffold Ga0247681_1024815


Overview

Basic Information
Taxon OID3300024310 Open in IMG/M
Scaffold IDGa0247681_1024815 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)873
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007754Metagenome / Metatranscriptome345Y

Sequences

Protein IDFamilyRBSSequence
Ga0247681_10248151F007754AGGAMRNYLTSIVVATALAAVLATPANAQVVLGGQTWTNTGTTLSLDATVPGGNQPLNIQCVICGDHQPQQDSTFGYTDFHNSGNLSDAIFFSTNVVGGGNPGVDTVGIGYDGSFLRAFLAAGGDPSLQFSIGIDVNDTGTPQTLEAFALLNLTQHTVLAQYSLLQPGGALIPSQNNGTGFPDYTLSGFNINLGTDIQAGDQLIFYARISGANDGPDSFFLVPQQVPAPIAGAGIPGLIAACGGLVAFAR
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