NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228624_1056368

Scaffold Ga0228624_1056368


Overview

Basic Information
Taxon OID3300024313 Open in IMG/M
Scaffold IDGa0228624_1056368 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 29D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)769
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058909Metagenome / Metatranscriptome134Y
F104912Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0228624_10563681F104912N/AMMTMKEVCEYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNH
Ga0228624_10563682F058909N/AMKLTNTEMNVLLVALDHMEEHITDLIEERTLRGDMWQERLDACESIRTKIKK

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