NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0228657_1001220

Scaffold Ga0228657_1001220


Overview

Basic Information
Taxon OID3300024314 Open in IMG/M
Scaffold IDGa0228657_1001220 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 70D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9169
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (32.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028771Metagenome / Metatranscriptome190N
F062669Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0228657_10012201F028771N/AFYDWDIKAKYKGSEVTYEVKYDSKGYYYADRYSRPVNLYIEFQNTKKGEDSGIIASKATYYVYILKSLEGVETAYVFKRLDLLNYLRNNDVKVKGNSFGGDNNAKGWIPSLNSLEDLIVKKIKFI
Ga0228657_10012204F062669GAGMIITMAKKKKTSFNYYKTNNKAQSHCFKKGYVIYPDPVNPKSFKGEWRVSIELGHRKHTYPEILSLTEAYIKIWKEYEKIQNRDNNGKT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.