NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228670_1021851

Scaffold Ga0228670_1021851


Overview

Basic Information
Taxon OID3300024319 Open in IMG/M
Scaffold IDGa0228670_1021851 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 85D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1648
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071133Metagenome / Metatranscriptome122N
F094928Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0228670_10218513F094928GAGGMVMRRSDVNSWVQSYGGGQLRTFDRTVGIYVNAYVRGTGVTSYSRGQWFYHRFEYVNASNGVYNNYVDGGINAGRIIYPIDIVDTLEDLTRRTVDLIEGRMSNRTINAYYCHASCHSSCHSSRGRR
Ga0228670_10218514F071133GAGGMSMQKSYCKQMRYSGPESLSPGDATKFDVLIQMEVLSGCQQACLGCFVDKNIDPAMNQQIIDRAKELTDGVKRTGLNLREFVIGPTDFFTASNTESVLNNETVQEIMREHTGARIAAPAKFDVATMERVQEIFNILDDEDKFRREMIIEFIMPIGRVDQMLNDILYYEEVMRKVKFFK
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