NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228652_1009300

Scaffold Ga0228652_1009300


Overview

Basic Information
Taxon OID3300024326 Open in IMG/M
Scaffold IDGa0228652_1009300 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 64D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3087
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080818Metagenome / Metatranscriptome114N
F082723Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0228652_10093005F080818AGGAGMNKLLIALAFIFTTTTAQAESKDLLVSLPCDTFVNVLEIMENDKEHLMFIGDTAIRETTTGQFYKAGLYVWMNLDTQTSSITIMFPDTTMCLLATNTSFQTYQGRQPWDRMKLKDDL
Ga0228652_10093006F082723N/AAVIATAAVMVASTASAFDLGNGLTAGAEVDMNYTTGVELWALEAKPELAFSTMGAALSVGSTFDLMNLNGDDTFKGLDFDASYPVGMGLTAYGEVSTDADFEFGDIKVGASFKF
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