Scaffold Ga0228652_1012375

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0228652_1012375

Scaffold Ga0228652_1012375

Overview

Basic Information
Taxon OID	3300024326 Open in IMG/M
Scaffold ID	Ga0228652_1012375 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Monterey Bay, California, United States - 64D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2620
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078536	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228652_10123751	F078536	AGGAG	MRKIEKTFTYPIWDEWRKNSFENGRTGTFTYKGPEFLTFEVGNDPADTDNYQKESGWCLWEKTDLERPTAADITRVTVDCKENPLLCEIGNDDGKEEGVQLRRQREWKVLWDAPDGYMDVEYTDELEPRDVYDEQNITYDFATETFNIGIHDWAATG

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