NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228635_1030409

Scaffold Ga0228635_1030409


Overview

Basic Information
Taxon OID3300024328 Open in IMG/M
Scaffold IDGa0228635_1030409 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 44D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1601
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED221(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077259Metagenome / Metatranscriptome117N
F089769Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0228635_10304091F077259AGGMRSVNFQYIQQAHTILSKNNMRLSNKRLRRLAYFDVYLQNFTHFGLYNRYKKVVNSDASNNQMITLAVVLIIFS
Ga0228635_10304092F089769GGAGMVDDKEIWVTYENRIDTLISNKKISLSEVTELFEIGHAYNMQRKLIPEALSDWMKNQADEYRSRSKSLYKTLGIELPKSRPTDGYTMAMVVSNVWEGIFSEKPIEDIFSSIGKKYDVDSSVIMQNFMKHWSAGLDYHLVLRMRELSPFEMGLVATFVSPIIEKNKSISDKLN
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