NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244777_10000910

Scaffold Ga0244777_10000910


Overview

Basic Information
Taxon OID3300024343 Open in IMG/M
Scaffold IDGa0244777_10000910 Open in IMG/M
Source Dataset NameCombined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22200
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (84.78%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Associated Families17

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000447Metagenome / Metatranscriptome1128Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F002245Metagenome / Metatranscriptome578Y
F003379Metagenome / Metatranscriptome490Y
F003422Metagenome / Metatranscriptome487Y
F004051Metagenome / Metatranscriptome455Y
F005741Metagenome / Metatranscriptome391Y
F006744Metagenome / Metatranscriptome365Y
F006984Metagenome / Metatranscriptome360Y
F009143Metagenome / Metatranscriptome322Y
F010085Metagenome / Metatranscriptome308Y
F017995Metagenome / Metatranscriptome237Y
F021481Metagenome / Metatranscriptome218Y
F051704Metagenome / Metatranscriptome143Y
F080026Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0244777_100009101F006984AGGAMPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDISSSGFPTKIQQVSYSNPVF
Ga0244777_1000091010F005741GAGMKNRYRVEIYDANKMNDVTIYSDSGVDKEYLTELVFSNLRKFSGKVNAYVFDNVKKKKTTAMFLDEAVVNKYKVI
Ga0244777_1000091011F021481AGGMSPILDTAKGRFYRKGDVFTTGKSGITGTITEIISIRPTLTKLGLNTENGLRWAMVKIGA
Ga0244777_1000091013F004051AGGAMTLGNKTYQVGDLFTTLKSKETGVIKEIIPNASGSVRVRLETDNGERWTTVLADSLA
Ga0244777_1000091015F002245AGGMSNLMKVPHTITFEAIIDLDKIPASMLPTLIALPENAIQEMCKGATLNALSLSNTLEVANTGNYWAELTVKDTE
Ga0244777_1000091018F017995GGAMARMKEYVEIISAACDECGGAGFLFWGDENNYDVEPCECVVETEDELTLDWVNE
Ga0244777_1000091019F006744AGGAGMNLDEFKKHVIAQREASKAEALSVLSATITKTNEGENLNG
Ga0244777_1000091020F000447AGGAGMGYIEIFRMNEEGAGWVDLSEATPDELFQIEIGLLNEGAFE
Ga0244777_1000091024F009143GAGGMMTKWDTIQADVSDAYVYLDEEEMYEKALAEGAIDFDSDDYDDDELHKALTLDWND
Ga0244777_1000091029F051704AGGAMHDHENIVLATGSGITEMQLMWIIMGAMAIHHIWMWWKMKKKNCNCK
Ga0244777_100009103F001125GGCGGMGDRANFGFKQSDGNTIFLYGHWAGHEMLANLASAVSAAEPRWQDESYATRIAISNLIGEDWKSETGWGLSVDRILDNEHKIPVINWTAKTFTLFEEDLTTEVFSLSLADFVQKYSRLVM
Ga0244777_1000091030F003379GGAMKKLSALIILIATAILSGALLNRFLNWAGNIEIFDFDLNEDIDNEQF
Ga0244777_1000091031F080026AGGAMAYSQDQMEFAHKVVFRLMEILKVCPNVDDKYKCHTTHQAPHRRCVDLMVLLAEITNLPEYLEYLGNNPETNKDPYGWIIEYPPAEDIIAKTVDLE
Ga0244777_1000091035F010085AGTAGGMQIQYVSKYIALSEEGLVPRLECPMDQGSLLCNIDLEDNIYLYCLSCNYKNNIGLEVYKKIVESVTNEI
Ga0244777_100009105F001043GGAGMSDYKDGFTDGYKFAREEMMEKLSEIDIMDIDSWILDRISEMIEGGQL
Ga0244777_100009106F000311N/AMYFELTAPNQVAFARATWDAELLGLDPMTIAPLTFNIGTGSIEKVSRIRDKYNLTESYISDYEPTGYTGR
Ga0244777_100009107F003422GGAVNVSGPWYNSSMTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIAPSNQTKEEQMESTVTTSPIPDTYNPNLLVTYKVIRGYSDAEYATDKVASLEWDLHNGRQSQKNVTTLQSKINTVKDIITEAYADSDDQDTLRAIAEALGIELVREVLFTATLEVSGTYTYNILDSDYELDLDSEVTDALYADSNNGNITIDDTEVCHVREA
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