Basic Information | |
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Taxon OID | 3300024343 Open in IMG/M |
Scaffold ID | Ga0244777_10002138 Open in IMG/M |
Source Dataset Name | Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13731 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (85.71%) |
Novel Protein Genes | 19 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 17 (89.47%) |
Associated Families | 19 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000263 | Metagenome / Metatranscriptome | 1424 | Y |
F000441 | Metagenome / Metatranscriptome | 1136 | Y |
F000852 | Metagenome / Metatranscriptome | 860 | Y |
F000868 | Metagenome / Metatranscriptome | 853 | Y |
F001043 | Metagenome / Metatranscriptome | 794 | Y |
F001562 | Metagenome / Metatranscriptome | 670 | Y |
F002245 | Metagenome / Metatranscriptome | 578 | Y |
F002598 | Metagenome / Metatranscriptome | 544 | Y |
F003422 | Metagenome / Metatranscriptome | 487 | Y |
F003690 | Metagenome / Metatranscriptome | 473 | Y |
F004051 | Metagenome / Metatranscriptome | 455 | Y |
F004431 | Metagenome / Metatranscriptome | 438 | Y |
F006744 | Metagenome / Metatranscriptome | 365 | Y |
F011299 | Metagenome / Metatranscriptome | 292 | Y |
F017134 | Metagenome / Metatranscriptome | 242 | Y |
F024319 | Metagenome / Metatranscriptome | 206 | Y |
F038241 | Metagenome / Metatranscriptome | 166 | Y |
F063705 | Metagenome / Metatranscriptome | 129 | Y |
F076101 | Metagenome / Metatranscriptome | 118 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0244777_1000213810 | F000263 | AGG | MTISDDMFTDKESLELPPHLQRMVDAGVTGLDIMHGELKNLMLIAEQELADAIAREEETEEAMDSMDRTNAEGRLDMLVELYQLTYQLSFAIGARNEA |
Ga0244777_1000213811 | F063705 | GGAG | MTKSSVFLEYMKLHLISLNQDWEATKNGEPLKDDEYDPSDDYFQGAIEATEHLLSVATDIMNNSNERVYE |
Ga0244777_1000213812 | F038241 | GAGG | MLGYTKEDLDQMINAVHDAKLFYILNSGVEQIDKDLLVDALLKTNDFLQGLWAEGYFD |
Ga0244777_1000213813 | F000868 | AGGTGG | MSFLENENEMVIDMTYSEIGAMLVEDWVNANLDEGQLYADFRFAEMSDSNYLKGRFNLFYDLNPGDQYYLEWNEEL |
Ga0244777_1000213817 | F001043 | AGGAG | MSDYRDGFDDGYKFAREELMEKLSEIDINDIDSWILDRLSDMIEGGAL |
Ga0244777_1000213819 | F003422 | N/A | MPAKVRGQILCYGSHKKSPEIYRQLSVGPGTILFMTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIAPSTQTKEEPMEESTVTTTPIPESYNSNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNGRQSQKRVTTLLSQIDTVRDIITEAYADSDDQETLRSIAEALDIALTRDVEWSATIEVSGTIQLDLLADSDTDVEQEIYDNLYVDSQNGNIEIVDTEVCNVREN |
Ga0244777_1000213825 | F004051 | AGGA | MTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVSDSALIGA |
Ga0244777_1000213827 | F002245 | AGG | MSNLMKVPHTVEFEAVIDLDKIPANLLPALIALDTYSVTKMCKEATLHALGMSNVIPLANENNTWAEVTIKEGN |
Ga0244777_1000213830 | F017134 | GAGG | MELFTVACLNYEICGAQETFDSVEEYEIYGDDWTCGECYDSEEMEFYELGGWADSDALASAGHGMDEDY |
Ga0244777_1000213832 | F011299 | AGG | MTMTRKHFEAIAEILNYNSGKTHPAVFSKMVLDFAELCANENPNFNVTKFYEASNYVIPKLSTR |
Ga0244777_1000213833 | F076101 | GGAG | MYKITLSYDGNAPHWQQDYASEFDAWKDFFAFTDWGFANEFSTVNIYNSEMKCFTKHFYREERKVVTVK |
Ga0244777_1000213834 | F002598 | AGAAGG | MATKLYTIENLLIGKNYRSNSRHFSGEIISATARPEIWYGEKTEAFLIEVRTGGLRNKFATIAVKVGE |
Ga0244777_1000213835 | F006744 | AGGA | MNLDEFKAHVTETRKQSKIEAMSVLSATITKSTTTKEGATNGN |
Ga0244777_1000213837 | F001562 | GGGGG | MNKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELENE |
Ga0244777_1000213839 | F003690 | AGG | MIPTGFELSITNEYGFEFDSFLGAIYLPWHTIIITALALIAYKIYKRKKNK |
Ga0244777_1000213840 | F004431 | AGGAG | MTITYSIWDGAQLLGVDFKATSADEMNKVVADLMKVSRNVVAHMRKVEM |
Ga0244777_1000213842 | F024319 | N/A | KMTNRIWESRNDYLVESDAKRLGYVSCSAGCGRVTAYSLCVMCGGNYAEHNLVGVR |
Ga0244777_100021387 | F000852 | GGA | MTTKREYLKQQGITVGVRGRFSGAAKVALAEAAAKGVTFTAEAPVKKAK |
Ga0244777_100021388 | F000441 | AGGAGG | MRMSDNYINDQLNKAQKLLWGGSETENIEAHNIISKLIKDRVEQTDQI |
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