Scaffold Ga0244777

Basic Information
Taxon OID	3300024343 Open in IMG/M
Scaffold ID	Ga0244777_10013132 Open in IMG/M
Source Dataset Name	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024343 Open in IMG/M

Scaffold ID

Ga0244777_10013132 Open in IMG/M

Source Dataset Name

Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5227
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (85.71%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

5227

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (85.71%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001460	Metagenome / Metatranscriptome	690	Y
F020171	Metagenome / Metatranscriptome	225	Y
F031497	Metagenome / Metatranscriptome	182	Y
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1001313212	F000441	AGGAGG	MKMSDIYLNDQLDKAQKLLWGGSETENIEAHNIIAKLISDRIEQADLS
Ga0244777_1001313213	F000852	GGA	MATKREYLKSQGITVGVRGRFSGAAKVALAEAVAKGVTFTAEVPANKAK
Ga0244777_1001313214	F031497	AGGCGG	MSKSPEIKVAESIVNLTEDHWFNPTIFGRYLAEQPMYTIDRIMEMVVSIISEQSKIHGVHGYTSEGLMLAVELNECIKAYQEDNQLESLKLPARSFKVPKREEPIVRQGFGWREEQDPFN
Ga0244777_100131322	F000311	GGA	MYFELTAPSQVAFARAIWDAELIGLDPMTIGPLTFNIGTGSIEKVSRIRDKYNLKESYTSEYEPTGYTGR
Ga0244777_100131325	F001125	AGGCGG	MGDRANFGFKDRKGDTVFLYGHWAGHRMLENLANAVEAARPRWTDESYATRIAISHLINDEWKSETGWGISVNQLADNEHKVPIINWAAKTFTLMEEDLTTEVFSSSLDVFVNKYSQLEEPAMV
Ga0244777_100131327	F020171	AGGCGG	MAEQFIDTIAEHITGAMQQEIGEALFDQWSYNNLEEGEAYAEFRFMEYASRELKQQYNEYYGYIEGDEFLL
Ga0244777_100131328	F001460	GAG	MMLGYTAEDLDRMTNAVHDAKLFYLRTPSDLMDKEPLRKDLEDAVSFFQGLWAEGYFD
Ga0244777_100131329	F084239	N/A	MNKSSRFMEYLKIHLISLEQDLEQIDYVNGHHFYRVKQAEIENTRHILSVATDIMNSSNERYNNE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244777_10013132

Overview

Ecosystem & Geography

Associated Families

Sequences