Scaffold Ga0244777_10062585

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0244777_10062585

Scaffold Ga0244777_10062585

Overview

Basic Information
Taxon OID	3300024343 Open in IMG/M
Scaffold ID	Ga0244777_10062585 Open in IMG/M
Source Dataset Name	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2386
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F014142	Metagenome / Metatranscriptome	265	Y
F017133	Metagenome / Metatranscriptome	242	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100625851	F093845	AGG	MIKATLTTTSGTTKDMKFNSKEHLLEFIELFKSTLHQGTAVCIDAPLVGVHSGWIQGTSTKD
Ga0244777_100625853	F014142	AGGA	MISLNEVTVVVEPTHPMASSNTKSPYLFRTKDGNYISRMAYVYMVASENLISHKYLSPNESKWVFANRGTN
Ga0244777_100625854	F003965	AGGA	MNSTIIEVCKTHTPNKSAISMVGDDQFTFCEVCEQNIERWYNDTDPERLPMWTNWKVSK
Ga0244777_100625855	F017133	AGG	MTNSIFEKGFATLSDYPKGYMNLCPCGQVVKAPALYHEGFPWWENPNKCKELFEELNK

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