NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10000967

Scaffold Ga0209992_10000967


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10000967 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33999
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020626Metagenome223Y
F037477Metagenome168N
F048246Metagenome148Y
F052548Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0209992_1000096720F037477GAGMTKNEFKDIVKRGFFSCKWRKNNGQIGHIKLGVVGKLGYRFTQEKRVTEHPNYVLVFKINSRAKEGFQRWANVNPNTVFEISGKSYPQ
Ga0209992_1000096722F048246AGGAGMVLPEDKYDPIVDALNRINESLEEQNDTLRKISQHYDSVVPVMKRNADRVDEAHSDNRSALDKMYEVFSN
Ga0209992_1000096730F020626AGGMNGPIVKMVSVHDELKRAQDAFYSSMFDGDEIEMLQAHAAVGYYESMEGTTCPEYPGF
Ga0209992_1000096742F052548GAGGMNVKDYVEYRMKEKILERKKELEKQMTDLVNNINKGRDAIRNMESSVGQVQGAIQQCNWTIDQMELTDDKSLAKK
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