NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10021667

Scaffold Ga0209992_10021667


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10021667 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3455
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013815Metagenome / Metatranscriptome268Y
F050681Metagenome145Y
F081430Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209992_100216672F013815GGAGMYYVQYEKTLPPWYSGIDKIQAETSEDAVKEFYKHHDSFEERVRSVSEVQNTYQK
Ga0209992_100216674F050681GAGGMKKFKEYLEEGVFKVKIPDVAPTFVEAGSAAEVKMNMRKIMKPDVVNDLEIERVTPAKMKKMYRDMAQGKEEPNE
Ga0209992_100216675F081430GAGMLQFKEYLNETKWAGSLSDKLFDVGIGLSGLWLPMSTPIFRRIGLDDFRTTCFHVTDTEGYEGIKKMQGQKKSISAFFDMQNKYMSRGIQTQGGVILELDANILSAWREDVMSSPDKTGRRWIQLSYFGGMYRVQDDIDMMVGGDGKKNSLFELIKDLLKKYLPGQHAHKVKLYNATEKDLAKHWQNMALWLRKEKDYRKIMGNVVKDYIDGVEKIMKANVKRLQSIFRSYLNRRTTDATWDEVIVNMIQIKKVHLIDSDSWHRSSSSGDPDEDDYMGYEDFLKKVKADGFKGQFWENEMDLEIHIRKLMKSQAGK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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