Scaffold Ga0209992_10103267

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209992_10103267

Scaffold Ga0209992_10103267

Overview

Basic Information
Taxon OID	3300024344 Open in IMG/M
Scaffold ID	Ga0209992_10103267 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1277
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Kolumbo volcano, Aegean Sea
Coordinates	Lat. (^o)	36.5264	Long. (^o)	25.4868	Alt. (m)		Depth (m)	470
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000479	Metagenome / Metatranscriptome	1092	Y
F010276	Metagenome	306	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_101032671	F000479	AGGA	MSKAVNIIEVLEKAQQSPASVSKRNKQAIVDAYGRALTMQKVLADFIKVNRQLMIDLSMSENANLLHGRDYSIHVTQKLGAKIDTQLVKEKLGEIAYHQCKVPTQYKQIQAMPLSESTVSRNKKSTIDEVADFRISA
Ga0209992_101032672	F010276	AGGAG	MPDNDLDRRLAVVEQTFGLRTRDNAVATPNPNDVRATHTDNINWKALYKVLESEVETIVLDPNCPQYVKEWGQRIMQRLAQHIT

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