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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10000125 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 97139 |
| Total Scaffold Genes | 155 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 126 (81.29%) |
| Novel Protein Genes | 15 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
| Associated Families | 15 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000263 | Metagenome / Metatranscriptome | 1424 | Y |
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F000441 | Metagenome / Metatranscriptome | 1136 | Y |
| F000671 | Metagenome / Metatranscriptome | 945 | Y |
| F000852 | Metagenome / Metatranscriptome | 860 | Y |
| F001043 | Metagenome / Metatranscriptome | 794 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F001562 | Metagenome / Metatranscriptome | 670 | Y |
| F004051 | Metagenome / Metatranscriptome | 455 | Y |
| F005741 | Metagenome / Metatranscriptome | 391 | Y |
| F007263 | Metagenome / Metatranscriptome | 354 | Y |
| F023344 | Metagenome / Metatranscriptome | 210 | Y |
| F053291 | Metagenome / Metatranscriptome | 141 | N |
| F063705 | Metagenome / Metatranscriptome | 129 | Y |
| F099281 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_100001251 | F099281 | N/A | NKNFKVKNGLNVAGPATFDAAVNVDNLVLNSTPLAFDSSTGRLKIQINGAWKEIALLTDAAEDLGALTFMDIGLAMDYNGQPIYTVYANGVNTTATKFADGGDYSTEVYSMSFDSGTIA |
| Ga0244775_10000125126 | F000852 | AGGA | MTTKREYLKAQGITVGVRGRFSGAAKVALQEAATKGIVFTAEPVNKAK |
| Ga0244775_10000125127 | F000441 | GAG | VNDQLDKAQKLLWGGSETENIEAHNIIAKLIKDRIEQTNLT |
| Ga0244775_10000125129 | F000263 | AGG | MNAEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMFIAEQELSDAQAIEDESEEAMDSMARTEATGRLDALVELYQLTYQLSFAIGEAYDRELKAGMK |
| Ga0244775_10000125130 | F063705 | GGAGG | LTKSSQFLEYMKIHLISLNQDLEDARNNEPLNEDEYWESDSFYMGAIDATEHLLSVATDIMNSTSERYE |
| Ga0244775_10000125132 | F053291 | GGAG | MITTQELINYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC |
| Ga0244775_10000125133 | F023344 | AGGCGG | MEAFTDTVGEHILGAIQVDIEQHLFEQWNSKNLDEGSDYAEWQFMSFAPDNLKQSYNEYYGYIEGDEYCL |
| Ga0244775_10000125135 | F001125 | GGCGG | MGNRANFGFRDSKGETLYLYGHWAGSEMLHHLATAVAKAEPRWTDEAYATRICISQLVAQEWESETGWGLYINHIGDNEHKVPVIDWSKKTFTLYEEDLSQVVFSLPIDKFVDKYSRLVM |
| Ga0244775_10000125137 | F001043 | AGGAG | MSDYKDGFQDGYKFAREELMEKLSEIDIADIDSWILDRLSEMIEGGNL |
| Ga0244775_10000125138 | F000311 | GAG | MYFELTAPTQVAFARATWEAELLGLDPEQCGPLTFNIGTGSIEKVSRIRDKYNLTESYWSDREATGYKEK |
| Ga0244775_10000125142 | F005741 | AGG | MKNRFRVEIYDANKLNDLTIYSDSGVDKEYLTELVISNIKQFSGRVNAYAYDAQKKKKITAMFFDEDTVHKLKSKIQSAARISFKLE |
| Ga0244775_10000125144 | F004051 | GAGG | MTIDNHLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPTKETRWTSVSAKALLGA |
| Ga0244775_10000125152 | F007263 | AGG | MIKNYLDENEFYFIKDEMKFHCDESQFIYVCKAHGEQMGCYFCEFDYSKECECEA |
| Ga0244775_10000125155 | F001562 | N/A | SQFEIDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAEMENE |
| Ga0244775_1000012583 | F000671 | GAGG | MSEKILCYCCNKTKNSLSAKKSTLLNINLLLCETCIDSKLEPRWVVILAGRQIGHEFVKEHVSKKRYPGDEILASELLI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |