NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10000640

Scaffold Ga0244775_10000640


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10000640 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42445
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023853Metagenome208Y
F030432Metagenome185Y
F090400Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000064022F023853N/AMVSIKMAIIDEYYDHKLGWAYTKPGWYECSVRAEHIDKYNEMTQWLVNNVGKYKRHCRWCVTDTNKVSFKFRYERDYIMFTLRWS
Ga0244775_1000064024F030432N/AMNNTPFPITTVQNNKFLVSWPKWQSIRQFDTKKRLLAVLFADIGSEEVGIAIMAGVLSGGEVDIMWITMHTWAQDINGDYARYLEDMYDIKGVAFNNEDEAIKFQDYLEKKYIWKTLQA
Ga0244775_100006409F090400GGAGGLANNTYSSNTITLNGTGGGTGLSISPLSTSSITMDDSYLNGLFKNIHRSDYVKRYEVIESTEDVLALSVAWKRLRDNKDKSTHYMGITSLLDDNLFRRVEESDRIRANEIRDYFSKKIMLWSLKGIKLSKYRQDLNTFIHGNDKKITEELLPIIFRLPEFYEYDVKFDSFKREVKLDLATFDSPPLKQITTLTPITSFYKSNKRIKQFEYWLKNSNGNAHMISIEPKNPLKHIWDKMFINEHLRIEGTYYPKKYDELQYYQLLNWSLA
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Institute for Fundamental Biomedical Research
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