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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10000780 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 38688 |
| Total Scaffold Genes | 61 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (59.02%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000332 | Metagenome / Metatranscriptome | 1283 | Y |
| F002997 | Metagenome / Metatranscriptome | 514 | Y |
| F004432 | Metagenome / Metatranscriptome | 438 | Y |
| F014737 | Metagenome / Metatranscriptome | 260 | Y |
| F023109 | Metagenome / Metatranscriptome | 211 | Y |
| F024113 | Metagenome / Metatranscriptome | 207 | Y |
| F043944 | Metagenome | 155 | Y |
| F054875 | Metagenome | 139 | Y |
| F092064 | Metagenome / Metatranscriptome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_100007801 | F092064 | N/A | MKKAPKQIIAFLRNPTTWNADAFETAIRNEVENSTGALTASDELLIGSLVLVVETLVQAHIGLLEKGAIYHYNAGDAPSPYYKIRTESMDKAIKILAELALVARGRPKIKNKASEVDELFATA |
| Ga0244775_1000078015 | F054875 | AGG | MTKFSSAFGDKYQTNRKNLLIRSFELGGHTFKVRIPLVAESDAIYKKVSEPDEETIEKVYQEITKPLRQFENNQTEEFKFTDDDILVDGRSMREAAKNKAITEARITEFFKLLVPEMEGVTLEDLTYADIEEEFPISVQMQIVEKIGEVISPTYREARGN |
| Ga0244775_1000078016 | F043944 | N/A | MIFNGHTLETIAELDDVTLVNIQTMYADGMVGNYGVLTQLATLTNGVFNYMRTANSPPYKLANILGSAYDYIYPPLSDDKKKAAVNDSLLAFMQQAQGFDKTLFGVKDG |
| Ga0244775_1000078019 | F014737 | GAG | MTTINAVTGSQINHAEFVKLTVGNAATVYTFCNAAAPITVGGITFANLGALLNVGDVQRDIKATSDDMTIALTGIDPTNVGIILGNDIKGSLVEVWRGFFDSNNQIITTPTTQFFKRYQGIINSVSITEDFNSEARTRIATCSISCSSMRRILENRLSGVKTNQNNWQFIYTGDTSMNRVAQISNTYFDFGSPPMTQTQASETTVTMDNNSGGGDAP |
| Ga0244775_1000078020 | F023109 | GGAGG | MIRQATRYDIPRLLEIVEAYAYENPIKKLGESCNHFPRYVEELLFSIIQGRGFIFVDSNLRGAIVAYKSSNIWSPKVKELNELLWWVEPEYRNGTVGGRLWKAFDERAQAMLKAGDVDFVCTSISANGPLIDYTRRGYKALGATFVRE |
| Ga0244775_1000078023 | F024113 | GGA | MAIFNKNTLAQVSGFDNPILAGELVWNQKTYWNLTFTNSATSLPIDLTGATLNAQIVRRELSNIIDTRNGLTFDIADYNPAPAAIPLTITNIVAAAGSCTLVIDASAWSLMSTDPELEINAADPVGYSGRVKVSFPVSGTTPADDSIIFLLFLVRSDGVIVL |
| Ga0244775_1000078032 | F004432 | AGG | MVTAKKTAKTPVKAPAKVAAVKRSTPKPKPVPKVVVKNQTNVDKIIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRQVILQAITTQDKMPQLAKQEDLIAPAQSLLKDVDGLILLVHKANLASNSRTTVLALNADGTREKKIEGTVTSLFNASADRNSAMVAMLNGEVLCEEFNPSSKVGEWGVKQGVKFMCRGSIPPDMGKFAGYVAIGFKEKIEDIAALKTRINLAATDMAHE |
| Ga0244775_1000078033 | F000332 | GGA | MKWLILLFVLVIAGAVAKDGCHVREFYGIGYTIHNPSERHQQMIQWLKNNAPYCKASDYVVIWNNIAEWAGTADSSETRALIIHGYKDAVTREKK |
| Ga0244775_100007808 | F002997 | N/A | MAIARFEQITVNNLAFAKSSFGEQTTAQTTWFRTRARVQSVANSLKISEKYRLYQDVVNFILNYTPNTRTMVRNQNLYSINYNGYDWRIDNIRESDDRMTVVILAYRTDPVTAV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |