Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10001063 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10001063 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32826
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (18.87%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

32826

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (18.87%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009003	Metagenome / Metatranscriptome	324	Y
F027408	Metagenome	194	N
F037731	Metagenome	167	N
F040621	Metagenome	161	N
F043894	Metagenome	155	N
F062477	Metagenome	130	Y
F079655	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000106314	F079655	N/A	MTQEKKETAMRRLSKALRKRFQGPSVNITWIELDAFMMKAQTWELENILNSYTEGYTDCQNGLPNKAENESNTNV
Ga0244775_1000106318	F009003	N/A	MKAKDKAWQLYSNYFDIIENGKQEGNLADVHIKAINSALHCVDEALINAPSEIMQDFEGTGEFYSVKAYYHHVKNEILKMNGSKENALNRRAESRAN
Ga0244775_1000106327	F027408	GGAGG	MKQYDKQRETELLRKLFVITARRSMRPAMSDNLTMRLIFEELHLLTDKDEYKL
Ga0244775_1000106338	F043894	N/A	MRKRQELNKLIARTVGSKAALLRAMQRSNTPIVKKTLHNWCDDPGSIKLRQLINLSRVMELPVCEIVDCITIKTEGDE
Ga0244775_1000106341	F040621	GAG	MLNFNVPSHIQRERLNTCKKCKFYNGTFGTCGTPIVGNNVNAEENDVTYYKEKIKLCGCFMDVKTKFRFASCPARKWFAQDMKDEEISALDTFIGKISKANKIQSEDLQMLYYWYSKITKKHERPSGCASCIRDLITEFRRQLGKIESK
Ga0244775_100010637	F037731	N/A	MATKKQTKPKSEPSSITYKLIRYNLQLFDGLWSIPIAFALFIIAGTLSAEYFGDALISTEYVQYIVLASLIMVFANFITFLGIRFNFKALQREVYSKEIKYELNTYLTTWQKVVLYLLLYAFYFAAFLFILCMLMTATA
Ga0244775_100010639	F062477	N/A	MKFIAMKHITFSLVLLLTAISSFAQPSKNRTAFSNKDFTPELTTYDRQLFNLNFNSMLYWYDTALQIDSLYQMERLKVTYYSKITGIQATSYETLAEIYKNKQSIEKAIAVEKHNEIGELKKKNRRLIITNTALTLGITGLAFSTIYFAIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10001063

Overview

Ecosystem & Geography

Associated Families

Sequences