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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10003398 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16921 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (15.79%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006590 | Metagenome / Metatranscriptome | 369 | N |
| F008815 | Metagenome / Metatranscriptome | 327 | Y |
| F025030 | Metagenome / Metatranscriptome | 203 | Y |
| F035767 | Metagenome / Metatranscriptome | 171 | N |
| F101173 | Metagenome / Metatranscriptome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_1000339810 | F025030 | N/A | MKLRLLKEWNGKEPGKVGVFLSEYGEQMIKDGIAELLDESFVVEQMPQKDQVQQDPIYIPIPVPNSYFADEADEEKITKQKK |
| Ga0244775_1000339812 | F006590 | N/A | MKTITIANTSIPIKFGMYVLGTFLRERKLKLSDLSLLGEDLLLALELAFTGVEHGYKAINKKCPYTLQDFCDLVDTDMGGITRIMEMISNEISPPEDESQKNVVAKAESSHLNTSNAFVSEF |
| Ga0244775_1000339815 | F101173 | AGTAG | MGVRFSTTVYNEKSRKITVSIKDSSFSGTVKTFDTLSLGIQYDSESQQGQERFTPIIGSRCSLSLLINNEDLQTLLLDIGLAVEGRFTMELTAYEDDNTTVSFKWYGYIVTDLVEFEDVPLVIGYQAQISAIDGLGWLKTLDYKSAVGPYNGQDTVVQHILNCLNQLDFVQENLVANSLPVLHTIFNWHENTIAYNAASDYSLLTVIQHRAFYHKDTKSNYIYQSCYDVLKKICQTFGARLIFSGNQYWFIQVNEYSRTPATKRYFKYNAFGIQQSGTFTADLTLSNIQTNLPGSYLMRLSGGKWTYYPALKNVVIRYNHFAKQNLLAGVEYNYATNTTPVITTTPTLDASNPDARLSYTGILGFYAQALNPVNFEPFQFVFAVKVASIINSFPLQGFESANWTLGSGWLIDNKILEGTLIATEAFYTTFTVTSGRKYYVKIKVDIENSGSLRLRLGGVTKTITESGDYDYVILSTNTDTLKLDSVSTPKFTGKIKSLEVKQENKYLKRRVNYTSGFNFQLEAASWETSFSEFEFNTETINADAAFVAYKTITFDTLDIPDTAEYIWEMRLKEMRNEAGTNIISNFAVSYLLSNNYLEFLPSGATTGQSDILEYGSDNDDKSSTIFSLDTYIGDGPSKTTDGGLKVLESGTYQNSSSWDVGNGSSFNNITQLLVNEVIRGQLTPKLRMVDMPFQNLVVDNPYLPHKVIKYSSGYYVFERGSLDLKTEIWQGDYFKIELDA |
| Ga0244775_1000339816 | F008815 | N/A | MPNFTERAVLSKPRDFAEVANNAGSGGVVNNNVTETVNNVTVTGSAVSIFNQEFLNTTSNILTWTQNGGILPKTNLSASIHVYQNGQKLIESQYVITAPATITIDSNSHYDGSNYIIFAININ |
| Ga0244775_100033988 | F035767 | N/A | MGYLSAKQINHLKDLQKSNYAGRRSFQGMSLRVVGLADAVIEFAELMEQCTVKERSRVIDSATPIALQVYKSLVPVSSKPHRISTNPFSNKKMQGWAKNDGASMIVQPGNLRKSIIDLSKNLVSYKRAVGAIGPLYKRNTMNRGINSSEGTNGFYAHMVFGSTRAWYNKIVVKARNLSREKVIKTMRDECIFIMQERPKKFWQVS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |