NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10003811

Scaffold Ga0244775_10003811


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10003811 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15953
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (21.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015337Metagenome / Metatranscriptome255Y
F021980Metagenome / Metatranscriptome216Y
F024553Metagenome / Metatranscriptome205Y
F055726Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000381113F024553N/AMAKLNEEIQKVLDNTSDTLYREEIYINGRHEYDYHKLEATPSATVHTLYYSDDFEWADHVRKTVAMQLVDTGSGVELIGVSTKKEINYLEAEQLHILLRLSSSHSVYQIAEPIVKTNF
Ga0244775_1000381121F055726N/AVDWGIEDWEYPNDHIYAIERQKDIEASWQQWEEEQQSRNRLPAIIKIEIPILNDEIHCHTRTVRRAHQKRL
Ga0244775_100038113F015337N/AMKKIEMKPVEFYHFRKLAFAMSIAFACTIAQGVYIVEANIDQLKQLGY
Ga0244775_100038114F021980N/AMNKFECSECGTKYSSPETTPPPGIKWSDGHVCTPKSVK
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