NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10003859

Scaffold Ga0244775_10003859


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10003859 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15842
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (39.13%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008495Metagenome / Metatranscriptome332N
F009267Metagenome / Metatranscriptome320N
F011222Metagenome / Metatranscriptome293N
F018136Metagenome / Metatranscriptome236N
F019318Metagenome / Metatranscriptome230N
F020694Metagenome / Metatranscriptome222N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000385916F019318GAGMLASLLIATQGLMPSPTPLSIGVQGLLFISVVPPVPVNPIDLPGGGGRGREERKVTATVRGVRLVFSVANVEACAGSRIEIVGSSCFTNAGEAELSASTSTTVMGARTHSSTNRPEIRFSMSFDVIGGEEENELEVYLMAQAAMGLLDD
Ga0244775_100038592F009267N/AMKKNKDNELEKDDEILRVQAMEDGPKIVNGRILRPITALTISWMQRNEVFSGTMDLVWKSAAFAYLHSEPYSAIRSVVNDRSAFINAVDSWIENNMVHHLEISAMTDAMNAAFELYNASATQSKEGSGSGN
Ga0244775_100038593F011222N/AMDCNIKFFHTINLKCAVALATLGFKMNKPPVTRLVRTDGKESTEFWFEGVNAKGQDASQVYRQMTKEGDELEATDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK
Ga0244775_100038595F018136N/AMITDSTYTLTLEKALTDTFVLALQQEMQSALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCVSHDITGLKTKLNAVRPQYAFVFGILRDGPVSLSSNDRHFERSVTITVHAALFAS
Ga0244775_100038598F020694N/AMLDIFTNDLAAMLDELPVVVTFGEATFVANRTTYRRDNSLADGGFMNTSATNITAIYSAVVQTISLGDILVIGGTRLRVTSAELSQDAVSVDFTLEDINK
Ga0244775_100038599F008495N/AMAEYHGLFAMVDYCRPIYPQNDHSGFDRIINLQIWPDLHEDFCASPLGWSDYVYGLFPDGKDIDRQIVLNSPAIVTPPELRSWVLCFPTGYSQDKKIDPRDVITAAHQVANGRPVLCAGKAAHGMAEFETIEYMCAYIRDANEVVTINTSTSILSSALRKSWVHISDSPKHDFTHPNQRRIERKF
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