NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10003999

Scaffold Ga0244775_10003999


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10003999 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15512
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (51.22%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007921Metagenome / Metatranscriptome342Y
F011394Metagenome / Metatranscriptome291Y
F021988Metagenome / Metatranscriptome216Y
F066776Metagenome / Metatranscriptome126Y
F072349Metagenome / Metatranscriptome121Y
F105192Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000399910F007921GAGMIIDWLVNRIFRWDSLRKAVFDEVRMYQSIDRSMWEYEKEGPTNLTWAEGDRWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWLREADAH
Ga0244775_1000399918F021988AGGMSNSFKKEDGTGTTPAPNAGAAAGAVTSRETPKRYPRQGVKIDTNKHGIRRETSLVPKPPKKSGRKKV
Ga0244775_1000399933F105192N/AMNIPLTEIIITLFAAAISGLLTAQIGARRSKKEKLERQADKAHDQLLLELKDLEIKLYKLEKDLNEWKDKYFEALQELIRVKAELEGTLLKLSHIEIHSNEH
Ga0244775_1000399934F072349AGGAGGMDKVLCYSCNKSKNELSAKKSVLLPINLLLCKSCAENKLEPRWIVILAGRQYGSDHVKEHIAKKKYVGLDITASELLI
Ga0244775_1000399935F011394AGGAMFIDKNKDHFKYGINEWTGEPNKPTFYNKEMALKIRELKKPTSTLEMDIVKYPEFLAIRLYENNFAQYDGSMRVRVIEYVEMVKNILESYGVRVELEGKPGGKNHG
Ga0244775_1000399937F066776AGGLLHLTEKGVEIFIKRSRTKLQESFWNNYDLVIWKKDNGGYTDVKGMYRKDAWGKAEKISVSREGIWKLPKRYVKYFK
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