NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10004418

Scaffold Ga0244775_10004418


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10004418 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14577
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001872Metagenome / Metatranscriptome623Y
F003964Metagenome459Y
F009743Metagenome / Metatranscriptome313N
F010530Metagenome / Metatranscriptome302Y
F033005Metagenome178Y
F048950Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000441812F010530GGAGMIDYALILNANYPGTQWSLDGETYDGLTWLDETPKPSQAELDAAWPQVDYNNQIAAVETTRRIQYEAQSDGLFFEWQRGTNTKEAWEAAVQAIKDANPYPPAPTKKK
Ga0244775_1000441815F001872N/AVATAKTNPNARPYTGNSDGASAGPRAGMNEWIKQALVLSNGALWNNGSWGVRDMRGSAGTLSVHATGRAVDLSYRKSERHENASRKGALEFIDIVVANANTLGVECVLDYFPAPYGRAWRCDRQAWKKYSKPTIHGAPGGDWFHIEITPQAADSVIFVKAAFLKVFGEIPPKA
Ga0244775_1000441822F048950GAGGMTLEELITNIERLQAVYNSMVDPEQHEARQYVRWAIKHLADKTYMAAL
Ga0244775_1000441824F033005N/AMTRKLTEHDTAIYKQARAELLRDQPLCHWCKKNPACELDHLVESDKGGTLEDGYVAACKSCNSARGASYRNRKLANAKQNREKAINDFLYANEMPP
Ga0244775_100044187F009743AGGAGMKIKLQLKRTPDSAPEFYYTNLFVVTEWERLERRNVQQLSANPLYSDYACWMHTILKIKGEQVGDNWREWLSKNPDIDILPVLDETDPNPTDAAPTAAN
Ga0244775_100044188F003964GGAGVAEVSAKIEVVGLKEALKTLNKIDKSLRREITKDYKKIVQPVIDDANKLVPSNVPLSGMARNWSTRSGFKMLPWIPGMKQKIAAKINTRNIKEYGGNKSNVGTFVIQWQGATGTMFDTSMAGSLGRALTSRYGSRSRVMWKAYEQRQNDVMSEMEQLVKRVMSEANRETA
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