NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10005833

Scaffold Ga0244775_10005833


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10005833 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12408
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (18.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018708Metagenome / Metatranscriptome233Y
F031120Metagenome / Metatranscriptome183Y
F032238Metagenome180Y
F057374Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000583314F018708N/AMRNNATFVDEQQLKFLKQMDNWLSNEPWQNEIEAKTAMEVRSLITKIEDKGYYYEGEADLLNLMREEYIKHKKKKKRL
Ga0244775_1000583315F057374N/AMRNKILLFIILLTSSLLSSQNFVGENFRLSADSGNVVITFEDQNSDGVYIGGVLTKSFGQLTITREEFKTKFIANLKKISGKKDYEIVEDSYRLDKYSFDIENVFIQVGNKIGSITKEEIKKLRKL
Ga0244775_1000583320F032238N/AMGKILYMDSTIQLLGKTNKKATEKLIKENEIIHAETISYLSVDDKDIKIRKTLDGAPLVELDKPMALVVNTRVPNKWILQDTETGEIYRGTAKTTIGEQWEKIMTIDEKV
Ga0244775_1000583327F031120N/AMNYTFTQLLAGWGGLIWMSTSFPIYILYILWRNNWKVLHSVSDSWYKLKQHERHEEIFFTIFTYFLGIGTLLQYYLHPIFFLAGMGFFWVGTQTQFRGESIKETIHYLGAVLGIGGSLIGLGLTFSWIPLLIMLGGVGIMKLLKINNFLWWVEILAFILVIGGLWVH
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