NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10006671

Scaffold Ga0244775_10006671


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10006671 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11452
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001883Metagenome / Metatranscriptome622Y
F004366Metagenome / Metatranscriptome441Y
F094950Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000667111F001883AGTAGMGRYANTGEFNVLYPTRRRMATILKRILRNDIVDGEGTLVESIRINAKITGFEKLEIQIIAMYYFIFLNNGAFLWNGGVITPRDYVAQFTAELNSAGITAEIYSQYTEWLTKKFPILDVVEVLEKNQRIVYTFEALDPPAGFTPGFPLDV
Ga0244775_1000667113F004366AGCAGMNSLQAITNHIIAFYTAHKQVFKVGSDFKEQLYNFATQDEKYPLVYIVPSGVIPTENTTEFSFDIYCYDIIQKDRANIITILSDTQQILNDLYIYYMDSTDYSFDVVGVPTFTPLNNDLLDYAAGYQMSITLTVNDWTDCAVPI
Ga0244775_100066719F094950N/AMVTILGREIPNKIEELTIEQFEAITDINNNKEIDPVDRHLQIFEYLGIPEKEFFDFDISEFIEIVKEFNSAQDPLANQEAVTTLELDGFTYTAELKLTVRETKLIEKIAIHKQKGYISDMMAVMFKADHLTKAEHYAEAHLKLKSKHIRKLKAEICIPYIMFVANKVKNQVEDVPTEAVE
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