NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10009208

Scaffold Ga0244775_10009208


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10009208 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9503
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017135Metagenome242N
F020172Metagenome / Metatranscriptome225N
F064230Metagenome129Y
F087132Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100092082F017135GAGMIQIISCPLPGGGRALLKTSDIGGATTAKNPQECDVYVLGWAQEGITIDLSVEEFAEVWVSALLDEEDEPEYEIVFASDGLH
Ga0244775_100092083F064230AGGAGGMRSYLPQMACTECHKIMVPQFKREYPHKLDGWSCDCGHSEKAILRERMFTRASAQNQDDRQA
Ga0244775_100092085F020172GGAGGMCTTVKRAMFCTRNGYKHIPNLKQVCVLVGRLKGLTESEYLDLCATNKLENVRALEMAKHYPAH
Ga0244775_100092089F087132GAGGMVAATRRHKIRSVKDEENRRALSVRGKAEYIFDLIDEIGELDPNDEQHFQAKVQQKKTQAELRLKMLAKLMPDLKAIDADLTSSDGSMTPPMVIELVAKGLD
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