NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10011705

Scaffold Ga0244775_10011705


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10011705 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8304
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030093Metagenome / Metatranscriptome186Y
F035756Metagenome171N
F047060Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1001170514F030093N/AMENYKADYYNPETFEKSEIETKIPVDLFNEVKQTLDKMDGYMITPTMVNPDDNSVVFGIIDLSDTTLKYKISITPNYL
Ga0244775_1001170516F047060N/AMKNNEEKMTRLIEHEGVWRKIGDLIQIKEKRSFLFWYLPFFKTVTYQIDFIGLDCSALLKNPKTKELRTITGNVNVL
Ga0244775_1001170525F035756N/AMYDDLLLMRDILCDIASELYGDLYVCNDNFWGSPTEKEMYKVEESLSNLGFTYTPSPEMMTLVDMMAQEKGYKRRD
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