NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10013984

Scaffold Ga0244775_10013984


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10013984 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7504
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (95.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004978Metagenome / Metatranscriptome416Y
F006112Metagenome / Metatranscriptome381Y
F007524Metagenome / Metatranscriptome349Y
F018539Metagenome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100139841F004978GGTGGMITADTLKTLISYTAQDLTREAQRCGYKGPEFTGAKFLGITNGGQFCYMAVFQVKGGTDSTKVWLDYNHTVDKVY
Ga0244775_1001398416F006112AGGAGMKQDYTMYIYKTDRRTKTGERLYSTTVWTGRDQAGMQREVEELHLHHFPRSQFRMEYCPTMKTVRNLMSGKDVQIAHDTPRSCDPSSELYWTM
Ga0244775_1001398420F018539AGGAGMSTILSANTAKAKLIYVKNKETYKIVIAFNVHKKIKDNGDIVHLFPTQAKCNYVSGDLAYETLQADTAFVIAQAKLQLRTDNIEFV
Ga0244775_100139847F007524AGGALRKLSNTHAVAINKLMLPLISTLAHIDDDNDINMYKMYADDIAHNIAALCVFNNTLDAEVLHDNIMRQDTCPREHFYTVLQYIEDNKLISANMFACR
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