NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10016428

Scaffold Ga0244775_10016428


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10016428 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6845
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005591Metagenome / Metatranscriptome395Y
F010532Metagenome302N
F066266Metagenome / Metatranscriptome127N
F067760Metagenome / Metatranscriptome125N
F078570Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1001642810F067760AGGAMNVRKIDMFIMRKYGDYCDESLRYNDFQKTFQAWKDDNIIELVKDYKEYRRILRYGS
Ga0244775_1001642815F005591GGAGGMKFYFKSTTLDKEIGWTWAGLSMNDKAYWDTWIPKKSDIKIITRLNKEQKKQALDELWEDLQSAIQFTRDRNNSRRRQKRLDKKSNP
Ga0244775_100164283F066266AGGAGMSILNEHELEKKIVYTIKEKIQEALAYRTYDSRTNKRCVQDYRKTIRDAKDFDELKRIMSEFVDDLMHI
Ga0244775_100164288F078570GGAGGMSDEHIILEGKVMWAFLNKKDKWGAYGICLIPNKKSLEIVKENKFYNYKEDKGLISLRYTELDVKIYDKQNNLVMNLPYYLGNNSHVKVRCESFIWKMNNEKCLHLKDIKILKHVKIKSDINWEVK
Ga0244775_100164289F010532GGAGGMNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDEPMKVSEVDIIHRIEEHMSYMVSSYLTKSYEGIGID
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Institute for Fundamental Biomedical Research
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