Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10023510 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10023510 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5559
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (25.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5559

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (25.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F009333	Metagenome / Metatranscriptome	319	Y
F018001	Metagenome	237	Y
F042337	Metagenome	158	Y
F053303	Metagenome / Metatranscriptome	141	N
F092051	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1002351012	F053303	N/A	MSNLKVQIAGTIYQINEKAFRTTGWNREPITPYFYASYVAAGQLVKQWVKKNYPNVVCRVKGDSFANGNSMHVNVSNPDGTPIPQSDWEAINNFANLFEYGRYNGQEDLYESYENSGLVTDNGTVIQAGVKYVSVDNRPSFGTVEWARYELSVGRPYSDLSRYCDPKILDKAMAA
Ga0244775_1002351013	F009333	N/A	MNTLRFNRHELFTSEMMDYHSTTLRMVEDFYMNQNQSWFNEVYNMLCGVWDGYLYGELLESAKQLGLPTHITNRIQYTINFIQK
Ga0244775_100235104	F018001	N/A	MLTIQNIEYLKGKELNDWKILDAGQDLRSQLGKNVYLLTFARIDKIGVMQDDRAGVIIDRNISQLMSGYQIRIVYEDWTYEIGTSYWAAVDIRNKDAFFGMVLNKINTEYWKRNK
Ga0244775_100235105	F007690	N/A	MLTIVNIDKLVNQKIWDGWEVRAVYEGNHNGTYIFELAKFRAHQGYPTEKCTIMLERTGHRGSDNVNNGKVYFFIYNSQRTNVCASADWLADKDNMIAKLEFILVNKEKL
Ga0244775_100235106	F042337	AGG	MELVIEGLDKLIYRTYHGRKISDIRIDKREPGTKSASYVFTFPPIGNGLDGWNKKMEIYLCKYPTPNEQYELFVMGLHGVTCYYLERDEIKDFEKFHNYMVSTMFKAKFYWESL
Ga0244775_100235109	F092051	N/A	MKSFKIRENQILIDGVLYGPTPSEVKIKGKAGTIQSIGIQNRGQYFPISGEYIDDTIVVTDDSTGIVEDTKPTKKTRKTK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10023510

Overview

Ecosystem & Geography

Associated Families

Sequences