NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10029297

Scaffold Ga0244775_10029297


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10029297 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4913
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012774Metagenome / Metatranscriptome277Y
F012978Metagenome / Metatranscriptome275Y
F013085Metagenome274Y
F016809Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1002929711F012774N/AMEPIILHIDLGNQSLTSWLSENKYIVYSELIRYCDKLLKDNLKEVQAIMVSNLSDNIVFIIKRDNVKLTLDKAMDFFMDIEEYEKCAEIRNLYILIENLKNETTDIKISKSNQRGLKSNR
Ga0244775_100292973F016809N/AMSKINEEFMKQQLTGSIGGDEDFLYEQYIAQEQMNEKYWQWKNEQSHSIFPDEVQYDDEYYKSSYLPTPDEEVENYKQTKQNGHT
Ga0244775_100292974F013085N/AMDILSEIIEASNEMIDALEETDFFVETPFVDRIPLKRALQIAMQRKWEQEDDMFLNDEEFLEVCKSVSNKSIGKTIENLVDRGALNMSVNEDGEILYSANKDFQFDKDDDDEFQQD
Ga0244775_100292975F012978N/AMNFNKTDEELKGMSDDELFEYLDAKALHLKQHTSPLSSYKTKKFASIGAAISNTEFDYDSVKQIAKENEQKGYEKFIKDKNKNNE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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