NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10034956

Scaffold Ga0244775_10034956


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10034956 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4451
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003067Metagenome / Metatranscriptome509Y
F012572Metagenome279N
F020906Metagenome221Y
F046904Metagenome150N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100349563F012572AGGMRASLVYADIYRLGATGMSEQYELINLQTMTGKLFIGGELAGEYKVEQCDKCAMITQLDKFGYQKNSYENIIWFCKGCR
Ga0244775_100349565F046904AGGMNSLDLIVVGMVCLFMGLFIWAAYEMGYKVGLGEGYLRGRNIAKALKEAEAKR
Ga0244775_100349566F003067AGGMSQAQAYIAVALGIATLSGLMAGLVRHLVKYYLSELKPDGNGGHNLVGRVERIELRVDKIYEMLLEDRLSK
Ga0244775_100349568F020906AGGAMPTSAQVSVTTTAIVIVPATNFDQTANLHNLGGGAIYLGGANVTTANGYKFDNGDKLTVTVGDREALYAIAASGTHTVAVLTQIN
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