NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10042034

Scaffold Ga0244775_10042034


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10042034 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4020
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001562Metagenome / Metatranscriptome670Y
F004431Metagenome / Metatranscriptome438Y
F039631Metagenome / Metatranscriptome163Y
F063685Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1004203411F001562GGAGMEKTQFEKDLEIKESFIDLLNDVYPNVKIGYSTFTAAEILECCDPVAFAIGLVEHEDYLAELEEE
Ga0244775_100420343F039631AGGAMTSLDRNTIKHSQFGHLDLGQRIRLGAEMIANGETVSFRGASAETYRLVMTLANRIKQEREFPQCPCGECD
Ga0244775_100420344F004431AGAAGMTITYTIWDGVNFLGFQTANSVDEMNKTVKDLQKISKNVVAHLRKVETN
Ga0244775_100420347F063685GGAGMNEGFFTIEIGSYGFMLDTKWCYIALSWQLIITATLLTIAYKIYKRKKNK
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