NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10048584

Scaffold Ga0244775_10048584


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10048584 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3702
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000868Metagenome / Metatranscriptome853Y
F001125Metagenome / Metatranscriptome769Y
F038241Metagenome / Metatranscriptome166Y
F105171Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1004858411F105171N/AELEEKNVFGDPKYAVLCSEGVGWEQDTYGCLEIPTNIGQMGLWNGRVFISVDTVKSCQTIFKEDVSDYIRTFGSRLDSNCSLWQSKMSVAPATILA
Ga0244775_100485843F038241GGAMMLGYSKTDLDEMINSVHDAKLFYIRNSDVEQVDQDPLVEGLLKTNDFLQGLWAEGYFD
Ga0244775_100485844F000868GGAGGMSFLENENQMVIDATYSEIGEMLVEDWVNSNLDEGQMYADFRFAEMSDSNYLKGRFNQFYDLNEGDQYYLEWNEEL
Ga0244775_100485846F001125GGCGGMGDRANFGFKDSKDNIVFLYGHWAGHRMLENLADAVSAAEPRWQDESYATRIAISQLIKDEWASETGWGITVNELADNEHKVPIIDWKNQTFTLMEEDLKTVVFSTTLDAFVTKYSSQPSMV
Ga0244775_100485849F000311N/AMYFELTAPDRLSMEMAYWDAQITGLDPEAMSPLTFNIGTGSIEKVSRIRDKYNLTESYWSDKEATGYKER
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