NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10049652

Scaffold Ga0244775_10049652


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10049652 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3657
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000980Metagenome / Metatranscriptome814Y
F001125Metagenome / Metatranscriptome769Y
F002387Metagenome / Metatranscriptome565Y
F050154Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100496521F000980N/AMTHYQKYTWVCTGDCDALIEYTIKDGFGWPNGVMQLTCPCNSRCTLVSVEDATIPYTDTPLTKEEPMETETPAVIVPDTYNSNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNGRQSQKTVGVLNGKIDTVKDIITEAYADSDDKETLRAIAEALDIELVREFEFTASIEVSGTYSYNILENDYDLDLESEVTDALFADSQNGNIEITDQEVCNVSER
Ga0244775_1004965210F000263GGAMNAEDIGLPPHLQRLVNAGVNGLDIMHGELKNLMLIAEEQLAWAQAIEDETEEAMDSMARTEAEGRLDTLVELYKLTYDLSF
Ga0244775_100496525F001125AGGCGGMGDRANFGFKQSNDNTIFLYGHWAGHGMLERLANAVEAARPRWTDESYATRICVSRIVGEDWTQETGWGLSVNRILDNEHKVPVIDWAEQTFTLMEEDLQTVVFSLSLDKFCTKYSQLVV
Ga0244775_100496527F002387AGGAGGMASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDKFIQDEFNKFYDIKEGDEGYLC
Ga0244775_100496529F050154GAGMKIHLISLNQDFEDKYNVQSKINIQGQIIATEHLLSVATDIMNDDLQGKGY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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