NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10065753

Scaffold Ga0244775_10065753


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10065753 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3118
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009960Metagenome310Y
F017485Metagenome240Y
F027416Metagenome194N
F092047Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100657533F092047N/AMLKLKNFTNIEGMEFQLSSGNKFLIGIAKDEGEHYTFGVFPLLENDVPSIKDVIVYKLYKDILYGGDYYYGYWLESPKMKRIVKVKPENLTLKNFILELHIQTGMIC
Ga0244775_100657534F009960GGAMLTIENIQKIDGYALEVKGRGYYFKGWDNTTNDVTYFTLAGVSASNPLIRLTLHKKGRMVFDNIQNKDCYVYGVGVDGLLFHYPKEKLNTPAKFRNEIEQILNTIALF
Ga0244775_100657535F027416N/AMLTIENIQKLKGCKVGANGMVWKILATKELDYNSENIYSIVLKTYPDNIHRIHLYLDRELKDGQYYLTSSKSDIMRVVERQDMVDVYNFLRLIKKEIEYE
Ga0244775_100657536F017485N/AMNNEIKTKDIIEGITFILMIVATIGMFCLLYEVTELRELTKGVSNLQTIRK
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