NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10077168

Scaffold Ga0244775_10077168


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10077168 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2851
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023109Metagenome / Metatranscriptome211Y
F085345Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100771681F085345AGGAMVATMLLAAYYGSAAAATLALGGTMAYAATVFAVNFAVSMIVTKVFADNPEAQQDMGVRQQVPPSAVNAIPVVYGDAYMGGTFVDAVLSTDQKTMYYVLAVSGISTVGQFTFDTTKIYYGDRLVTFDGSDLTKVVSLTDEAGNVDTKISGNLYINLYKSNAAGTITLLNGASAPSAVMGGSDIAVGQRWTGTRQMNGLGFAIVKLTYNRDADTTALSPITFHVAHYLNGAGVA
Ga0244775_100771682F023109AGGCGGMRLATRYDIPRLLEIVEAYAFENPVKTLGKTENHDAKYVEQLLFSIIVGRGFIFIDKHMKGAIIAVKQKNVWSPNVTELHELLWWVEPEHRGGSVRGRLWKAFDSKADEMLKAGAVDFVITSISASGPWIDFTKRGYKAVGASFVKE
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