NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10083655

Scaffold Ga0244775_10083655


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10083655 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2724
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F001043Metagenome / Metatranscriptome794Y
F006984Metagenome / Metatranscriptome360Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100836551F006984AGGAMPNWVYNTLTIQGPKSEVDMIKDRLNKPFTLAIETHGMGDISSMGFPTKFKEVTYSNPVFAFFNIHSYKDEGITDE
Ga0244775_100836552F000450GGCGGMGNRANFVFVQDSGETIVLYGHWAGYDMLKNLADAVVHARPRWNDDSYATRIATSRLIGDQWNMETGWGLQVNSLSDNEHKIPVINWKDQTFSLHEQDDFRNQSNKVRGMKNEALFTMDLSAFCEKYSDELLPV
Ga0244775_100836554F001043AGGAGMSDYKDGFDDGYKFAREEIIEKLREIDINDIDTWLLDRLADMIEENNI
Ga0244775_100836555F000311GGAGGMYFELTAPSQLALQRAFWDAEITGLDPQLIGPLTFNIGTGSIEKVSRIRDKFNLTETYFSEYETTGY
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Institute for Fundamental Biomedical Research
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