Basic Information | |
---|---|
Taxon OID | 3300024346 Open in IMG/M |
Scaffold ID | Ga0244775_10084029 Open in IMG/M |
Source Dataset Name | Whole water sample coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2717 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F035766 | Metagenome | 171 | Y |
F072338 | Metagenome | 121 | N |
F078709 | Metagenome | 116 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0244775_100840292 | F078709 | N/A | MNTDLLETIVTVSNVFNGERKEKTLLFINEELAIKKAERISMENPDCIVSISSRKGAFFHFFKPLNMTKELDLVSEGKMGTIEYILKWTGLSANLQPEVKKVRRQKPGQAPSIENFQQAAGV |
Ga0244775_100840295 | F035766 | N/A | MTTTQKFKVLGVEQGITITRPFNKEMFDHNDNVRWMQNEAVIAALEGLKGSEDEELIEKATKACSGYGYGDGYDYIEMIDDAINNVETSANNWMKEEIWPDFLKLDLVSPLNVDYVGYKK |
Ga0244775_100840296 | F072338 | AGG | MKKVKFKIGDIVGFKGRGFGFGMIVSINQRAKQEPLYHIELLAGDMLIASHGECIEKLSPEDLELVQSLHSIGNL |
⦗Top⦘ |