NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10098938

Scaffold Ga0244775_10098938


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10098938 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2481
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030416Metagenome / Metatranscriptome185N
F095316Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100989381F095316AGGAMTNPTATVTTEGTTISALVKEGKALASIWKQTNSLKHTIKASGFDTRLGKLLQELKAQSTLDSGQISRQTLTMYGINIIDRRRRSEALWFVENEVECRKFIEDGKFKGTSLTALQKAMRDAEKASEETTEGETSNVGQSEAEQPKAETVKPRISHKVMVNTILAQTELNDLDLEEIISDLMLALEQRQAA
Ga0244775_100989382F030416N/AMRYKVSTVKASVEQDMLDTAMAQFCELADEMNRPTLDTLIDNTVTPEELKRRVPTLIHDSGWKDVKND
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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