Basic Information | |
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Taxon OID | 3300024346 Open in IMG/M |
Scaffold ID | Ga0244775_10103306 Open in IMG/M |
Source Dataset Name | Whole water sample coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2422 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001562 | Metagenome / Metatranscriptome | 670 | Y |
F017134 | Metagenome / Metatranscriptome | 242 | Y |
F045755 | Metagenome / Metatranscriptome | 152 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0244775_101033062 | F001562 | AGGAGG | MEKTQFEKDLEIKESFIDLLNDIYPEVKIGYSTFTPAEILECCDPIAFAIGLVEHEDYLAEMENE |
Ga0244775_101033066 | F045755 | GAG | MTQVAGMWICDNCDTLAIVSVATDTIVITQCKCVTNERETNV |
Ga0244775_101033069 | F017134 | GAGG | MELFIVSCLNYEICGAQETFETESEYEIYGDDYICAECYASEEMEFFETIGWSDSDALASAGHGMDEDY |
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