Scaffold Ga0244775_10131694

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0244775_10131694

Scaffold Ga0244775_10131694

Overview

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10131694 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2116
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F001725	Metagenome / Metatranscriptome	645	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_101316943	F001725	N/A	MAAISTGTTCLYGIPNGTVTNLFVQSYSLSAAFNAEATVADEDGRTVTARYDDRRSELTVEGVAKTSTMPILGASLSFTVNTASAYPAGTASTSFVGTITKIDDKGSNKGFTSVSITAVDYEQITP
Ga0244775_101316944	F001055	N/A	MGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNNATQTLPKAVVLCESARAPSDLPEGEGNYACSVRITLFSNADDTTLADHRLRCAALVGNMRDLVSIQAAFTATGDATCYDVTIMSEDEGIDERSWATSFSFDVLTVFPA

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