NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10143837

Scaffold Ga0244775_10143837


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10143837 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2014
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F010248Metagenome / Metatranscriptome306Y
F011938Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_101438371F010248GGAMRKSERIRLLEMEMLRMQFQIEYVSRAIDILLQENKLKGPDLDAGKWYTSKLNKDN
Ga0244775_101438374F002060N/AMDSSSIILAVCAAILSGMGTAIIAGIRDTAKEKNRRIERDQDHLKLDLKDLKIELYKIEKELTEWKDKYYNALQELIGIRAELEESLMQLSHYEHHADELDTEF
Ga0244775_101438375F000671GAGGMEKILCYSCNKSKNKLEAKKSALLPINLLICETCISGKLEPRWVIILSGRANGSDHVKEYIVRRRYIGKEIAASELLV
Ga0244775_101438376F011938GGAGGVKEYYDITHVVFIHAEDLHGTVEKLGAYASVVNYNKNGIEYNELMENEEFTIVDEIVFTHIEDSI
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