NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10183985

Scaffold Ga0244775_10183985


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10183985 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1756
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019647Metagenome / Metatranscriptome228N
F077299Metagenome / Metatranscriptome117N
F090393Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_101839851F090393N/AMALDKKTPFNVVFYDHEQDQINSWQFKGSARLALIVNTITSQKDKIEANNINKEEEIKSALDYINYEVKKFIETPYTTEDNV
Ga0244775_101839852F019647AGAAGMKIVKGIVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVVEDEQQTMPAPTGVAVIDQQSEKPDLAALVFEMSAIYTQAYIDIYNKISEAGVPHESATAATSTIFIQVFQKLR
Ga0244775_101839855F077299N/ATYRRKIIASHDNEVAALRHQVQMEERGRLEKEKLYAEFPTMIKDFTGKTFEDVPLYWYDMCLKFDMITYEEGEKRALWDEAQAIALKEPPESLDLLTIRSHANKIEQGNMKRAVVIAQKLAVWRKVIKK
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