NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10458281

Scaffold Ga0244775_10458281


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10458281 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1044
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001009Metagenome / Metatranscriptome807Y
F045098Metagenome153N
F084240Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_104582811F084240N/APRTKTPPKLHVYHTSPIAEKILKEIKLEVTGVKAKLTEQDKKNKK
Ga0244775_104582812F045098N/AMTGRELQQMYQQWCQGNDDYNFRWLDFVEMAARQFKQPESEVLRELQKHYWFVKNNK
Ga0244775_104582813F001009GAGMASNLNSEFNYRYQVIGSTPWEKIKTLQGFYVGRTRAAVLEECAELKYQAKLEEMKHLKTVPALPHILLNLQAEILELESHLDDQRHAFELNRKEIKILEKYMAELYAEVEPTRLKHDDGTPYTDDEMFEANANYEFTVTVGREIQSEIIALGRPSPAKLLNAMSNPQTLNALMQIGLVPQGTILLEQKDIMLEITDQSSSDNSVITNEVQTIESPANENKTI
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