NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10537474

Scaffold Ga0244775_10537474


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10537474 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)952
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052589Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_105374741F052589N/AMSIGCGANLFGTKSQFIKTNGGDFIAVDGSNTRERLILSDLRIPYKQILKSRIILKTGQINYLLNHLGLGDNATFLCMKVVYDGKSVIEADNYVNWSYYDDLTRVNHFSDMMVLTGNSTNRIPQLYLTNPSIKYPVYIDVMVGVIDDSYSIFTDTANQSGTTFVNLNYTDIHSHVIGESLVINDKSSPVKPLIYIRLSDINSIERSGQILIIDDSSLGIIFLQFLTENDTFQAHSLLNYILEHPSTNIDTLSPVSDSIDPV
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