NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10655085

Scaffold Ga0244775_10655085


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10655085 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)849
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F003182Metagenome / Metatranscriptome502Y
F010982Metagenome296N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_106550851F000403N/AMHSCCHSDCGGYSMSGPIEVINPRTMTCTLMEDGVIIATYKVEQCDKCSRLVKFDDFGYQKGFGNEKIIWFCAECR
Ga0244775_106550852F010982GGAGMIMVRLSREDEILAHTAGLARESYYGSNPKFLGNKGNFHNAVVIHSEAVGAEMAVAKYFGVEDFVPTVNTFKNEPDVYWNGIAIEVKQTPHKRGHLIISEDDRDTDIAVLVVGESPSYYVMGWIPVGVAKRPRFQSAQGGYWVSQINLQPIETLRKSIHANS
Ga0244775_106550853F003182AGGAMPILEFDCSICAKLYGKVKQRHGIRKTSELTLHEWFSTCLGCGAMGIK
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